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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2944886_2945107_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2944886 - 2945107
Intron Length:
222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATCA
Flanking Amino Acid:
DLFASPKKSVSANCILKPSS
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
29.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.8
0.83
0.7
84.7
23
Minor 5ss
35.2
-1.7
2.8
38.4
40.8
Minor BPS
66.1
0.5
1.5
75.42
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004152
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021760
2936024 - 2952849
16826
ENSAPLT00000004317
2936055 - 2956553
20499