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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29449411_29451123_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29449411 - 29451123
Intron Length:
1713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGCAG
5'SS Class:
major
3'SS Sequence:
CTTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
ATGTCTTCAACT
Flanking Amino Acid:
KRRSGIGRITGLDPAQPYFQ
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
62.2
43.7
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
93.6
0.98
0.6
92.3
18
Minor 5ss
30.2
-2.3
3.2
35.3
42.3
Minor BPS
70
0.71
1.5
82.6
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008682
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009128
29443978 - 29458746
14769