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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29451608_29452905_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29451608 - 29452905
Intron Length:
1298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TTTTTTTTCACA
Flanking Amino Acid:
QIVDLDGIWEGTRDFVACNH
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
94.4
1
0.5
91.2
20.6
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
69.5
0.61
1.7
82.25
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008682
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009128
29443978 - 29458746
14769