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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2945204_2947204_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2945204 - 2947204
Intron Length:
2001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATCTGGT
5'SS Class:
weak_major
3'SS Sequence:
TTAATGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
GTGCGCTTAATG
Flanking Amino Acid:
LFSTAKTNPPKAVEKKTVKA
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.2
60.1
44.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
80.3
0.68
0.9
77.2
41.6
Minor 5ss
46.5
-0.4
3
66.5
44.9
Minor BPS
53
-0
1.9
57.43
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004152
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021760
2936024 - 2952849
16826
ENSAPLT00000004317
2936055 - 2956553
20499