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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29454314_29455475_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29454314 - 29455475
Intron Length:
1162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
TTCTTCTATGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TCTAACTTACTG
Flanking Amino Acid:
LNTADAKDFALWRYKVTATL
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
76.6
34.9
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
80.8
0.69
0.8
77.8
29.9
Minor 5ss
42.2
-0.9
3
58.8
40.3
Minor BPS
48.9
-0.2
1.9
56.74
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008682
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009128
29443978 - 29458746
14769