About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29455588_29456393_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29455588 - 29456393
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATAAAA
U12 Branch Point Sequence:
TTTTTTTCCACA
Flanking Amino Acid:
DGNTRQHQIIKGTLKPDNTY
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
27.6
Major BPS
53
0.08
1
60.9
31.3
Major PPT
91.4
0.93
0.6
87.9
22.3
Minor 5ss
36.7
-1.5
2.8
41.8
38.8
Minor BPS
55.3
0.16
2
74.67
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008682
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009128
29443978 - 29458746
14769