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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29478737_29479991_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29478737 - 29479991
Intron Length:
1255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ACTCTTTTAATG
Flanking Amino Acid:
HSVEHALRKSNVDFVKWSSQ
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.9
33.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89.4
0.89
0.7
85
29.8
Minor 5ss
31.4
-2.1
2.7
33.6
35.4
Minor BPS
59.7
0.17
1.3
58.14
38.3

Associated Gene:

Gene:
HSPA12A
Ensembl Gene ID:
ENSAPLG00000009823
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037906
29475191 - 29532713
57523
ENSAPLT00000032768
29476555 - 29571712
95158
ENSAPLT00000010255
29476555 - 29529879
53325