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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29481802_29484577_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
29481802 - 29484577
Intron Length:
2776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACTACTT
5'SS Class:
major
3'SS Sequence:
TGTCAATGACTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTCTTATACT
Flanking Amino Acid:
SDTIGTGFTQAKEHVRRNRQ
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.2
59.4
45.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
55.9
0.13
1.1
48.6
43.7
Minor 5ss
36.5
-1.5
3.5
48.5
47.1
Minor BPS
57.7
0.32
2
79.44
43

Associated Gene:

Gene:
HSPA12A
Ensembl Gene ID:
ENSAPLG00000009823
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010255
29476555 - 29529879
53325
ENSAPLT00000037906
29475191 - 29532713
57523
ENSAPLT00000032768
29476555 - 29571712
95158