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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29484750_29506292_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29484750 - 29506292
Intron Length:
21543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TCTTCTCTGATC
Flanking Amino Acid:
KQFMRQAAYKAGMATPENPE
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
79
0.72
1
69
38.9
Major PPT
84.6
0.78
0.7
80.4
24.9
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
58.7
0.25
1.6
69.8
36.3

Associated Gene:

Gene:
HSPA12A
Ensembl Gene ID:
ENSAPLG00000009823
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037906
29475191 - 29532713
57523
ENSAPLT00000032768
29476555 - 29571712
95158
ENSAPLT00000010255
29476555 - 29529879
53325