Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29506410_29509033_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29506410 - 29509033

Intron Length:

2624

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGAATAA

5'SS Class:

major

3'SS Sequence:

TTCTTTTATTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTTTCTTTTATT

Flanking Amino Acid:

LQFFKEQALKELSDQAGSDF

Intron Amino Acid Position:

174

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

1.1

67.2

34.4

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

84.5

0.78

0.8

85.3

28.3

Minor 5ss

35.2

-1.7

3.4

46.4

48.9

Minor BPS

75.6

0.89

1.5

91.64

31.3

Associated Gene:

Gene:

HSPA12A

Ensembl Gene ID:

ENSAPLG00000009823

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037906

29475191 - 29532713

57523

ENSAPLT00000032768

29476555 - 29571712

95158

ENSAPLT00000010255

29476555 - 29529879

53325