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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29509139_29510055_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29509139 - 29510055
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTCTTTCATGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTCTTTCATG
Flanking Amino Acid:
KFKMKLHTTGNLTMETDLTA
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
80
34.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
80.9
0.7
0.8
78
29.7
Minor 5ss
39.4
-1.2
2.9
52.2
44.4
Minor BPS
66.7
0.38
1.8
74.65
38.4

Associated Gene:

Gene:
HSPA12A
Ensembl Gene ID:
ENSAPLG00000009823
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010255
29476555 - 29529879
53325
ENSAPLT00000037906
29475191 - 29532713
57523
ENSAPLT00000032768
29476555 - 29571712
95158