Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29510243_29516937_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29510243 - 29516937

Intron Length:

6695

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGGCT

5'SS Class:

strong_major

3'SS Sequence:

TCTTGTTGGATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTGAA

U12 Branch Point Sequence:

ATTTACTGAAGC

Flanking Amino Acid:

TKEPECIHVMRRWEGGDPGV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.2

0.95

0.8

79.6

32.5

Major BPS

74.4

0.61

0.9

63.6

35.5

Major PPT

66.6

0.37

1.1

64.5

41.5

Minor 5ss

31.9

-2.1

3.6

47.6

Minor BPS

55.4

0.15

1.9

71.04

39.7

Associated Gene:

Gene:

HSPA12A

Ensembl Gene ID:

ENSAPLG00000009823

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032768

29476555 - 29571712

95158

ENSAPLT00000010255

29476555 - 29529879

53325

ENSAPLT00000037906

29475191 - 29532713

57523