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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29517066_29519352_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29517066 - 29519352
Intron Length:
2287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTATTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
TGCTATTTAACA
Flanking Amino Acid:
ITPLSPSHIVKDSDAEDAVE
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
73.9
0.54
1
69.2
40.4
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
67.4
0.54
1.5
72.93
38.9

Associated Gene:

Gene:
HSPA12A
Ensembl Gene ID:
ENSAPLG00000009823
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037906
29475191 - 29532713
57523
ENSAPLT00000032768
29476555 - 29571712
95158
ENSAPLT00000010255
29476555 - 29529879
53325