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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29519439_29529797_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29519439 - 29529797
Intron Length:
10359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGGACT
5'SS Class:
major
3'SS Sequence:
TGTTTACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
TTTTGTTTACTT
Flanking Amino Acid:
MLLSNAVSTSTYSS
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
71.5
38
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
85.1
0.79
0.8
82.1
34.6
Minor 5ss
42.7
-0.8
3.1
58.5
40.2
Minor BPS
60.1
0.39
2
82.98
39.3

Associated Gene:

Gene:
HSPA12A
Ensembl Gene ID:
ENSAPLG00000009823
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010255
29476555 - 29529879
53325