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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29519439_29555358_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29519439 - 29555358
Intron Length:
35920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTCTC
5'SS Class:
major
3'SS Sequence:
TGTTTACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
TTTTGTTTACTT
Flanking Amino Acid:
PWPYGGTLHRDAVSTSTYSS
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
70.7
39.5
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
85.1
0.79
0.8
82.1
34.6
Minor 5ss
44.9
-0.5
2.8
62
42.6
Minor BPS
60.1
0.39
2
82.98
39.3

Associated Gene:

Gene:
HSPA12A
Ensembl Gene ID:
ENSAPLG00000009823
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032768
29476555 - 29571712
95158