Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2952037_2952648_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2952037 - 2952648

Intron Length:

612

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATGGTT

5'SS Class:

strong_major

3'SS Sequence:

ACTTTGCTCTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTGAT

U12 Branch Point Sequence:

TCTCTCTGTACT

Flanking Amino Acid:

VDPTAQDIFEDDIFATEAIK

Intron Amino Acid Position:

674

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

78.8

35.1

Major BPS

88.6

0.96

0.8

77.7

37.1

Major PPT

65.1

0.34

1.1

37.3

Minor 5ss

35.2

-1.7

3.8

55.5

48.6

Minor BPS

53.1

0.18

1.8

73.99

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004152

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021760

2936024 - 2952849

16826

ENSAPLT00000004317

2936055 - 2956553

20499