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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29555447_29571664_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
29555447 - 29571664
Intron Length:
16218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTATCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTGTTTATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.3
0.68
0.9
74.3
40.6
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
64.5
0.53
2
87.39
38.7

Associated Gene:

Gene:
HSPA12A
Ensembl Gene ID:
ENSAPLG00000009823
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032768
29476555 - 29571712
95158