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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29588071_29590299_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29588071 - 29590299
Intron Length:
2229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTAAACT
Flanking Amino Acid:
TALVDPLRKEDRQQWNNICC
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
77.7
33.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.2
0.72
0.9
77.8
34.9
Minor 5ss
37.3
-1.4
3
46.6
48.7
Minor BPS
66.8
0.61
1.6
82.67
39.4

Associated Gene:

Gene:
ENO4
Ensembl Gene ID:
ENSAPLG00000010075
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047430
29576064 - 29603102
27039
ENSAPLT00000010496
29576064 - 29594299
18236