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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29596820_29604629_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29596820 - 29604629
Intron Length:
7810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
CTTTTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTACCTGTATT
Flanking Amino Acid:
KGAAGSKATSQSTSHTESTR
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.5
0.82
0.6
85.6
21.6
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
53.7
0.2
1.9
74.69
41.6

Associated Gene:

Gene:
SHTN1
Ensembl Gene ID:
ENSAPLG00000010399
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029516
29595616 - 29654496
58881