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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29598227_29604629_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29598227 - 29604629
Intron Length:
6403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TCGTTTCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAG
U12 Branch Point Sequence:
GTGGGGTGACCT
Flanking Amino Acid:
KGAAGSKATSQTKTVTIKGS
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
57.3
0.18
1.6
57.1
49.4
Major PPT
77.5
0.62
0.8
70.2
36.5
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
35.6
-1
2.5
52.77
48

Associated Gene:

Gene:
SHTN1
Ensembl Gene ID:
ENSAPLG00000010399
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010851
29598148 - 29654496
56349