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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29615738_29626095_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29615738 - 29626095
Intron Length:
10358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TATTGTTTATGT
Flanking Amino Acid:
RKKAESFAQEMFIEQNKMKR
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
83.1
30.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.6
0.73
1
80.6
37
Minor 5ss
35.6
-1.6
3
47.8
47.9
Minor BPS
48.4
-0
2.2
72.42
44.8

Associated Gene:

Gene:
SHTN1
Ensembl Gene ID:
ENSAPLG00000010399
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029516
29595616 - 29654496
58881
ENSAPLT00000010851
29598148 - 29654496
56349