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Intron Name: Anas_platyrhynchos_platyrhynchos_6_29628282_29629269_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29628282 - 29629269

Intron Length:

988

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTATGTATT

5'SS Class:

strong_major

3'SS Sequence:

TATTATTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTATTTTTAATT

Flanking Amino Acid:

RCKLVEVIEEVNKVKEEKAV

Intron Amino Acid Position:

179

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

0.9

86.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

81.5

0.71

0.8

40.9

Minor 5ss

49.5

-0

2.5

68.8

35.6

Minor BPS

0.99

87.98

30.9

Associated Gene:

Gene:

SHTN1

Ensembl Gene ID:

ENSAPLG00000010399

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029516

29595616 - 29654496

58881

ENSAPLT00000010851

29598148 - 29654496

56349