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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29632337_29634475_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29632337 - 29634475
Intron Length:
2139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TCTGAACTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CACTTCTGAACT
Flanking Amino Acid:
RESAEALASKLNKENKTLKR
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.8
83.3
27.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
75.2
0.57
0.9
70.3
40
Minor 5ss
30.7
-2.2
2.9
41.1
44.9
Minor BPS
63.5
0.5
1.5
73.44
43.4

Associated Gene:

Gene:
SHTN1
Ensembl Gene ID:
ENSAPLG00000010399
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029516
29595616 - 29654496
58881
ENSAPLT00000010851
29598148 - 29654496
56349