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Intron Name: Anas_platyrhynchos_platyrhynchos_6_29639177_29646419_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29639177 - 29646419

Intron Length:

7243

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTTGTATC

5'SS Class:

major

3'SS Sequence:

TCTCTTTTCCTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTCAC

U12 Branch Point Sequence:

CAGTGTTTCACT

Flanking Amino Acid:

RAENKKTKEECDKIKQERDE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

1.1

79.1

34.5

Major BPS

72.3

0.55

1.2

77.4

37.4

Major PPT

82.2

0.72

0.7

76.4

32.2

Minor 5ss

42.7

-0.8

2.5

54.7

42.5

Minor BPS

47.2

-0.1

2.2

64.04

46.7

Associated Gene:

Gene:

SHTN1

Ensembl Gene ID:

ENSAPLG00000010399

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010851

29598148 - 29654496

56349

ENSAPLT00000029516

29595616 - 29654496

58881