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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29646473_29654438_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29646473 - 29654438
Intron Length:
7966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
LELLASLKERAIGEYEELRA
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.9
33.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.5
0.93
0.6
88
22
Minor 5ss
25
-2.9
3.3
32.7
42.5
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
SHTN1
Ensembl Gene ID:
ENSAPLG00000010399
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029516
29595616 - 29654496
58881
ENSAPLT00000010851
29598148 - 29654496
56349