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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29655755_29655841_R

Intron Information:

Intron Rank:
136582
Intron Class:
major
Intron Phase:
Intron Coordinates:
29655755 - 29655841
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.2
77.9
38.6
Major BPS
100
1.24
0.5
100
0
Major PPT
85.6
0.8
0.7
80.5
30.9
Minor 5ss
30.5
-2.2
2.5
33.4
41.8
Minor BPS
70.7
0.65
1.7
81.19
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020934
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037144
29654645 - 29662311
7667