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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2965959_2966053_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2965959 - 2966053
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTGTTATTT
Flanking Amino Acid:
LKDDYCLNDYNISEGCTLKL
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.2
0.81
0.8
80.7
35.9
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
50.8
0.1
2.2
75.9
41.4

Associated Gene:

Gene:
ZFAND4
Ensembl Gene ID:
ENSAPLG00000003996
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030400
2958520 - 3015887
57368
ENSAPLT00000004114
2958268 - 2979788
21521