About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2968403_2971169_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2968403 - 2971169
Intron Length:
2767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTTG
5'SS Class:
strong_major
3'SS Sequence:
TTATTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
GTLTPLSESLSGGSVYNLYA
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
72.8
39.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
87.5
0.84
0.8
85.6
33.6
Minor 5ss
39.7
-1.2
3.4
55
49.2
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
ZFAND4
Ensembl Gene ID:
ENSAPLG00000003996
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030400
2958520 - 3015887
57368
ENSAPLT00000004114
2958268 - 2979788
21521