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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29701624_29702713_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
29701624 - 29702713
Intron Length:
1090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCCTC
5'SS Class:
weak_major
3'SS Sequence:
CCCCGTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TTTTCCCCCTCT
Flanking Amino Acid:
ARQLNLSETQVKVWFQNRRT
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.3
58.2
46.8
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
67.4
0.39
0.8
60.5
29.4
Minor 5ss
46.9
-0.3
3.1
68.3
42.6
Minor BPS
38.1
-0.8
3.7
77.09
45

Associated Gene:

Gene:
VAX1
Ensembl Gene ID:
ENSAPLG00000010700
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042328
29700054 - 29704210
4157
ENSAPLT00000011133
29700730 - 29704572
3843