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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29702902_29704334_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29702902 - 29704334
Intron Length:
1433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGACTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTGCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTAAAA
U12 Branch Point Sequence:
GGGTGTAAAACT
Flanking Amino Acid:
PDYCRRILVRDAKGSIREII
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
71.6
38.5
Major BPS
58
0.2
1.2
65.3
38.6
Major PPT
81.5
0.71
0.9
76.5
37.6
Minor 5ss
42.6
-0.8
3.1
59.4
45.3
Minor BPS
41.8
-0.5
2.2
57.92
44.9

Associated Gene:

Gene:
VAX1
Ensembl Gene ID:
ENSAPLG00000010700
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011133
29700730 - 29704572
3843