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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2973345_2973945_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2973345 - 2973945
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
AATTTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTGCTAGTAATT
Flanking Amino Acid:
PPNEAAEYILSAHALGMNGI
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
0.9
76
32.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.4
0.75
0.8
82
34.8
Minor 5ss
34.8
-1.7
2.8
45.5
37.1
Minor BPS
44.1
-0.3
2.2
61.51
43

Associated Gene:

Gene:
ZFAND4
Ensembl Gene ID:
ENSAPLG00000003996
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030400
2958520 - 3015887
57368
ENSAPLT00000004114
2958268 - 2979788
21521