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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2977093_2978864_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2977093 - 2978864
Intron Length:
1772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTGA
5'SS Class:
major
3'SS Sequence:
CTTGATTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATATTCTTGATT
Flanking Amino Acid:
KTGLATSYECRCGNNFCATH
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
65.9
42.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
80.6
0.69
0.9
77.2
36.7
Minor 5ss
41.8
-0.9
3.2
55.7
48.5
Minor BPS
72.4
0.79
1.1
81.38
33.9

Associated Gene:

Gene:
ZFAND4
Ensembl Gene ID:
ENSAPLG00000003996
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004114
2958268 - 2979788
21521