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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2977093_3015874_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2977093 - 3015874
Intron Length:
38782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTGA
5'SS Class:
major
3'SS Sequence:
GTTGTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GCTACTTTAACA
Flanking Amino Acid:
KTGLATSYECRCKA*
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
65.9
42.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
76
0.58
0.9
73.5
41.9
Minor 5ss
41.8
-0.9
3.2
55.7
48.5
Minor BPS
71.2
0.66
1.3
72.73
39.2

Associated Gene:

Gene:
ZFAND4
Ensembl Gene ID:
ENSAPLG00000003996
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030400
2958520 - 3015887
57368