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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29832006_29837977_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29832006 - 29837977
Intron Length:
5972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTTTT
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CAATTCTTACTG
Flanking Amino Acid:
RLQVTLIECTRLFIFGSYER
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
79
37.9
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
89.9
0.9
0.7
88.4
28.7
Minor 5ss
52.2
0.08
2.8
76.1
39.6
Minor BPS
50.7
-0.1
1.7
52.44
42.8

Associated Gene:

Gene:
PDZD8
Ensembl Gene ID:
ENSAPLG00000022941
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028149
29802918 - 29857383
54466