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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29838101_29856472_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29838101 - 29856472
Intron Length:
18372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
GTATTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
ATTTGTGTAATT
Flanking Amino Acid:
RKHTLPSYKIRFKPFFPFQV
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.5
40.6
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
86.7
0.82
0.8
84.8
35.6
Minor 5ss
32.9
-2
2.9
40.4
45.3
Minor BPS
50.5
0.09
2.3
77.48
40

Associated Gene:

Gene:
PDZD8
Ensembl Gene ID:
ENSAPLG00000022941
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028149
29802918 - 29857383
54466