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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29876053_29905734_F

Intron Information:

Intron Rank:
123595
Intron Class:
major
Intron Phase:
Intron Coordinates:
29876053 - 29905734
Intron Length:
29682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
AGATATTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
78
0.63
0.9
72.5
37.8
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
48.1
-0
1.7
63.89
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016654
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024815
29875804 - 29908304
32501