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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29903335_29906641_R

Intron Information:

Intron Rank:
147844
Intron Class:
major
Intron Phase:
Intron Coordinates:
29903335 - 29906641
Intron Length:
3307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
AATTTATTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
91.2
0.93
0.6
85.4
29.4
Minor 5ss
29.8
-2.3
2.6
30.2
36.8
Minor BPS
50
-0
1.8
63.62
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026831
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029346
29899437 - 29909805
10369