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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29906885_29909717_R

Intron Information:

Intron Rank:
147845
Intron Class:
major
Intron Phase:
Intron Coordinates:
29906885 - 29909717
Intron Length:
2833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTCAG
5'SS Class:
major
3'SS Sequence:
TGCTCTTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
CCTACCAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
64.9
42.8
Major BPS
72.8
0.57
1
81
30.3
Major PPT
79
0.65
0.8
77.4
31.4
Minor 5ss
26.7
-2.7
2.9
30.9
43.2
Minor BPS
47.5
-0.1
2
65.07
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026831
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029346
29899437 - 29909805
10369