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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29929807_29930486_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29929807 - 29930486
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACCCCC
5'SS Class:
major
3'SS Sequence:
ATCCCTCCTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTCTATTTATGT
Flanking Amino Acid:
PRDGGAPCTPSHSLLQTSPD
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.2
60.6
44.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
64.1
0.32
1
60.8
34.9
Minor 5ss
44.7
-0.6
2.9
60.8
43.7
Minor BPS
46.8
-0.1
2
65.06
45.5

Associated Gene:

Gene:
EMX2
Ensembl Gene ID:
ENSAPLG00000024273
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046877
29929520 - 29935659
6140