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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29930966_29932757_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29930966 - 29932757
Intron Length:
1792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CCCTGCTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TTTTGCTAATCC
Flanking Amino Acid:
RYRYLGQRFQGNETSPESFL
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.2
34.9
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
64.8
0.33
1
56.3
38.8
Minor 5ss
31.9
-2.1
3.3
41.7
44.9
Minor BPS
51.3
0.02
2.3
73.85
43.3

Associated Gene:

Gene:
EMX2
Ensembl Gene ID:
ENSAPLG00000024273
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046877
29929520 - 29935659
6140