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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_29932943_29935221_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29932943 - 29935221
Intron Length:
2279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCGTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTAAC
U12 Branch Point Sequence:
GGCGGGCTAACG
Flanking Amino Acid:
AHSLSLTETQVKVWFQNRRT
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
51.7
0.04
1.3
55.3
40.3
Major PPT
79
0.65
0.8
73.5
31.5
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
34.8
-1.2
2.5
36.99
44.9

Associated Gene:

Gene:
EMX2
Ensembl Gene ID:
ENSAPLG00000024273
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046877
29929520 - 29935659
6140