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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30014819_30020242_R

Intron Information:

Intron Rank:
138035
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
30014819 - 30020242
Intron Length:
5424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACACCA
5'SS Class:
major
3'SS Sequence:
GAGACATATTCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCCTCATGACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
65.3
40.7
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
57.7
0.17
1.1
52
46
Minor 5ss
37.8
-1.4
3.1
49.4
46.3
Minor BPS
47.4
-0.2
2
60.1
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021791
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037646
30014335 - 30050000
35666