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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30026678_30028474_R

Intron Information:

Intron Rank:
138037
Intron Class:
major
Intron Phase:
Intron Coordinates:
30026678 - 30028474
Intron Length:
1797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCTC
5'SS Class:
major
3'SS Sequence:
TATCTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
GAGTCCATGACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
38.9
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
83.3
0.75
0.8
77.7
30.7
Minor 5ss
33.9
-1.8
3.7
49.6
47
Minor BPS
58.1
0.24
1.7
64.76
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021791
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046760
30026507 - 30030241
3735