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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30028549_30030143_R

Intron Information:

Intron Rank:
138038
Intron Class:
major
Intron Phase:
Intron Coordinates:
30028549 - 30030143
Intron Length:
1595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGA
5'SS Class:
strong_major
3'SS Sequence:
CATATTTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCCCATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
71.1
35.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79
0.65
0.9
76.6
37
Minor 5ss
36.7
-1.5
3.1
47.8
47.6
Minor BPS
59.2
0.37
1.9
82.67
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021791
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046760
30026507 - 30030241
3735