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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30085655_30085736_R

Intron Information:

Intron Rank:
133384
Intron Class:
major
Intron Phase:
Intron Coordinates:
30085655 - 30085736
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAAAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TGTCCTCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.3
71.6
40.1
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
28.2
-2.5
2.7
31.3
42.4
Minor BPS
63
0.4
1.7
74.68
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019005
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047609
30083352 - 30086420
3069