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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30134926_30138460_R

Intron Information:

Intron Rank:
150055
Intron Class:
major
Intron Phase:
Intron Coordinates:
30134926 - 30138460
Intron Length:
3535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TGGCTTTCAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
64.9
40.7
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
37.1
-1.5
3.2
48.2
47.5
Minor BPS
49.4
-0
1.5
57.1
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045963
30131841 - 30138466
6626