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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30169293_30173038_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30169293 - 30173038
Intron Length:
3746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTTTTTAATT
Flanking Amino Acid:
SGIEDLRKTMDVNPFDATAG
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
81.9
26.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.5
0.66
0.8
74.7
35.2
Minor 5ss
36.6
-1.5
3
45.9
43.7
Minor BPS
78.1
0.96
1
86.75
33.6

Associated Gene:

Gene:
RAB11FIP2
Ensembl Gene ID:
ENSAPLG00000006278
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006509
30167798 - 30200050
32253