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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30173085_30186786_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30173085 - 30186786
Intron Length:
13702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GGACCTTTAATA
Flanking Amino Acid:
FKPPSMLPSSSFNTNPSGIE
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82.3
32.2
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
79.5
0.66
0.8
73.3
31.8
Minor 5ss
43.4
-0.7
3.1
60.6
44.5
Minor BPS
62.9
0.4
1.2
63.49
36.4

Associated Gene:

Gene:
RAB11FIP2
Ensembl Gene ID:
ENSAPLG00000006278
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006509
30167798 - 30200050
32253