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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30187250_30187952_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30187250 - 30187952
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
AGATTGTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATCTCATTGATA
Flanking Amino Acid:
LESFGSVDEGGSVKSPHRRT
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.9
83.6
29.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
69
0.43
1
62.5
43.5
Minor 5ss
35.5
-1.6
2.7
43.1
43.9
Minor BPS
61.2
0.35
1.6
69.61
36.6

Associated Gene:

Gene:
RAB11FIP2
Ensembl Gene ID:
ENSAPLG00000006278
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006509
30167798 - 30200050
32253