Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30219491_30220216_F

Intron Information:

Intron Rank:

140986

Intron Class:

major

Intron Phase:

Intron Coordinates:

30219491 - 30220216

Intron Length:

726

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGAATT

5'SS Class:

strong_major

3'SS Sequence:

TTCTCATGCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTTTTCTCATGC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.8

0.84

0.9

84.9

32.3

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

73.4

0.53

0.9

68.4

36.4

Minor 5ss

39.9

-1.1

3.2

59.5

44.6

Minor BPS

49.9

-0

2.1

69.92

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025928

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018752

30219435 - 30224543

5109